If it's the machine I'm thinking of, you have a separate taper crimp die. Make sure you are not crimping the case in the seating step. In the seating die you should take out any flair caused by the expander, but there is not need to crimp the case in that station. If you over crimp in the seating station you can cause a bulge in the case which will have an adverse effect on feeding and function.
To adjust the depth of the seating die, I take a sized case which has not been expanded, place it in the seating station, and with the tool head in its lowest position, adjust the seating die down until it touches the case mouth, then back it off slightly. You will of course have to adjust the bullet seating depth after making this adjustment .
This method of adjusting the seating die only applies if you have a separate crimp die.
Bruce